Yes, an FPGA is ideal for capturing quadrature signals into binary counter and feed that to your PC. 32-bits counters are not a problem (just take more space into the FPGA). You can use any of the PC interfaces that you mention. For example, RS232 is good (if speed isn’t an issue). You need to create a small protocol, controlled by a state machine, so that the 14 channels are muxed out to the PC, with maybe a double-buffer scheme since transmission isn't instantaneous...
Now since you are an FPGA novice, your best shot might be to try a few simpler FPGA designs first, and go from there!